| Position | Club | P | W | D | L | GF | GA | GD | Pts | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| Round of 16 — Direct Qualification | ||||||||||
| 1 | Suduva 2 | 6 | 5 | 1 | 0 | 13 | 5 | +8 | 16 | Direct |
| 2 | Aston Villa | 6 | 5 | 0 | 1 | 26 | 5 | +21 | 15 | Direct |
| 3 | Skenderbeu | 6 | 5 | 0 | 1 | 17 | 8 | +9 | 15 | Direct |
| 4 | Europa FC | 6 | 5 | 0 | 1 | 18 | 16 | +2 | 15 | Direct |
| 5 | West Ham | 6 | 4 | 1 | 1 | 19 | 3 | +16 | 13 | Direct |
| 6 | Gent 2 | 6 | 4 | 1 | 1 | 20 | 8 | +12 | 13 | Direct |
| 7 | Partizan | 6 | 4 | 1 | 1 | 14 | 5 | +9 | 13 | Direct |
| 8 | Nomme Kalju | 6 | 4 | 0 | 2 | 9 | 7 | +2 | 12 | Direct |
| Knockout Playoff Round | ||||||||||
| 9 | Real Sociedad 2 | 6 | 4 | 0 | 2 | 15 | 14 | +1 | 12 | Playoff |
| 10 | Motherwell | 6 | 4 | 0 | 2 | 12 | 12 | 0 | 12 | Playoff |
| 11 | Glenavon | 6 | 3 | 2 | 1 | 10 | 10 | 0 | 11 | Playoff |
| 12 | Real Betis 2 | 6 | 3 | 1 | 2 | 14 | 12 | +2 | 10 | Playoff |
| 13 | Riga FC | 6 | 3 | 1 | 2 | 10 | 12 | -2 | 10 | Playoff |
| 14 | Glentoran | 6 | 3 | 0 | 3 | 14 | 12 | +2 | 9 | Playoff |
| 15 | Ordabasy | 6 | 3 | 0 | 3 | 13 | 11 | +2 | 9 | Playoff |
| 16 | Drogheda | 6 | 2 | 3 | 1 | 10 | 8 | +2 | 9 | Playoff |
| 17 | Anderlecht 2 | 6 | 3 | 0 | 3 | 14 | 13 | +1 | 9 | Playoff |
| 18 | Young Boys | 6 | 3 | 0 | 3 | 13 | 13 | 0 | 9 | Playoff |
| 19 | Austria Wien | 6 | 3 | 0 | 3 | 8 | 9 | -1 | 9 | Playoff |
| 20 | Bala Town | 6 | 3 | 0 | 3 | 10 | 12 | -2 | 9 | Playoff |
| 21 | Tre Fiori | 6 | 2 | 2 | 2 | 14 | 15 | -1 | 8 | Playoff |
| 22 | Sivasspor | 6 | 2 | 1 | 3 | 13 | 12 | +1 | 7 | Playoff |
| 23 | Rennes 2 | 6 | 2 | 1 | 3 | 11 | 10 | +1 | 7 | Playoff |
| 24 | Lincoln Red Imps | 6 | 2 | 0 | 4 | 11 | 12 | -1 | 6 | Playoff |
| Eliminated | ||||||||||
| 25 | Lazio 2 | 6 | 2 | 0 | 4 | 9 | 11 | -2 | 6 | Out |
| 26 | Panathinaikos 2 | 6 | 2 | 0 | 4 | 8 | 10 | -2 | 6 | Out |
| 27 | Lech Poznan | 6 | 2 | 0 | 4 | 12 | 16 | -4 | 6 | Out |
| 28 | Wisla Krakow | 6 | 2 | 0 | 4 | 11 | 15 | -4 | 6 | Out |
| 29 | Hibernians | 6 | 2 | 0 | 4 | 13 | 22 | -9 | 6 | Out |
| 30 | Brondby | 6 | 2 | 0 | 4 | 11 | 22 | -11 | 6 | Out |
| 31 | PAOK 2 | 6 | 1 | 2 | 3 | 10 | 15 | -5 | 5 | Out |
| 32 | Kayserispor | 6 | 1 | 2 | 3 | 3 | 11 | -8 | 5 | Out |
| 33 | FK Liepaja | 6 | 1 | 0 | 5 | 9 | 15 | -6 | 3 | Out |
| 34 | Fiorentina 2 | 6 | 1 | 0 | 5 | 7 | 17 | -10 | 3 | Out |
| 35 | Jagiellonia Bialystok | 6 | 0 | 2 | 4 | 6 | 19 | -13 | 2 | Out |
| 36 | Lyon 2 | 6 | 0 | 1 | 5 | 7 | 17 | -10 | 1 | Out |